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IBDP Biology SL- Metabolic Molecules

Topic 2.1- Carbon compounds, molecules to metabolism

July 5, 2021

Molecular Biology explains living processes in terms of the chemical substances involved. In this IBDP Biology blog we will learn:

  • Carbon Properties and Metabolism
  • Carbohydrates, proteins and nucleic acid formation
  • Catabolism and Anabolism

Carbon Atoms

Metabolism: The sum of all the chemical reactions in the cells. Most occur in the cytoplasm catalysed by enzymes

 

We are Carbon based life forms

Carbon atoms contain four electrons in their outer shell - this allows for four covalent bonds with other types of atoms to be formed (Methane is CH4)

Covalent bonds: Strongest types of bonds between atoms therefore stable molecules can be formed

From these properties of carbon,  there is an infinite number of possible molecules involving carbon 

Life is based on Carbon compounds such as:

  • Carbohydrates
  • Lipids (Fats)
  • Proteins
  • Nucleic Acids (DNA) 

Carbohydrates 

Contain: Carbon Hydrogen and Oxygen

Carbohydrates: Organic compounds consisting of one or more simple sugars

Monomers are commonly ring shaped molecules (sugars that consist of single sub-unit) 

Isomers of Glucose: Compounds with the same chemical formula but different arrangement of atoms

Polysaccharides: All composed of Glucose

The basic linkage between the glucose subunits is a glycosidic bond

  • Glycosidic bonds from 

Carbon 1 to Carbon 4 (linear sturcture)

  • Glycosidic bonds from

 Carbon 1 to Carbon 6 (branced structure)

Cellulose: Found in plant walls made up of 1,4 glycosidic links (beta glucose)

Starch: Amylopectin has some 1,6 linkages

Glycogen: Store glucose in liver and muscles more 1,6 glycosidic linkages than Amylopectin (alpha glucose)

Lipids 

Contains Carbon Hydrogen Oxygen

Insoluble in Water but soluble in non polar organic solvents

Common Lipids are:

  • Triglycerides (fats and oils)
  • Phospholipids (plasma membrane)
  • Steriods (membrane structure)

Proteins 

Contains Carbon Hydrogen Oxygen and Nitrogen

Proteins: Large organic compounds made of amino acids arranged into one or more linear chains that then fold more complex 3D structures

Nucleic Acids 

Contains Carbon, Hydrogen, Oxygen, Nitrogen, Phosphorus

Sub-units are called Nucleotides

Nucleotides consist of:

  • Base
  • Sugar
  • Phosphate

All of which are covalently bonded

If the sugar is Ribose RNA is formed, If the sugar is Deoxyribose then DNA is formed

 Anabolism & Catabolism  

Anabolism: The synthesis of complex molecules from simpler molecules including the formation of macromolecules from monomers by condensation reactions eg. Condensation

Condensation makes bonds and releases water (reaction). Anabolism is the process.

Condensation builds molecules an example is Protein Synthesis

Catabolism: The breakdown of complex molecules into simpler molecules including the hydrolysis of maromolocules into monomers eg. Hydrolysis

Hydrolysis breaks bonds and water is used up (reaction). Catabolism is the process.

Hydrolysis breaks down molecules an example is Digestion

That's the end of this sub-topic yay!

References

  • https://www.google.com/url?sa=i&url=https%3A%2F%2Fwww.shutterstock.com%2Fsearch%2Fcarbon%2Batom%2Bmodel&psig=AOvVaw2GeAE9AZN0q-InCJQCqT4a&ust=1625159481465000&source=images&cd=vfe&ved=0CAoQjRxqFwoTCMCH74Htv_ECFQAAAAAdAAAAABAN
  • https://www.visionlearning.com/images/figure-images/61-d-2x.jpg
  • https://www.google.com/url?sa=i&url=https%3A%2F%2Fwww.visionlearning.com%2Fen%2Flibrary%2FBiology%2F2%2FLipids%2F207&psig=AOvVaw2tY6T0dveAFW5cPF0gpZ3y&ust=1625159666821000&source=images&cd=vfe&ved=0CAoQjRxqFwoTCIiMtNftv_ECFQAAAAAdAAAAABAD
  • https://www.google.com/url?sa=i&url=https%3A%2F%2Fwww.azom.com%2Farticle.aspx%3FArticleID%3D11177&psig=AOvVaw1NQXyfN2mV8a7Z-_Qm7PIM&ust=1625160302448000&source=images&cd=vfe&ved=0CAoQjRxqFwoTCMD97ofwv_ECFQAAAAAdAAAAABAR
  • https://www.google.com/url?sa=i&url=https%3A%2F%2Fwww.technologynetworks.com%2Fgenomics%2Flists%2Fwhat-are-the-key-differences-between-dna-and-rna-296719&psig=AOvVaw3NFaQAt2fSJ0DAOdNew3lU&ust=1625160359222000&source=images&cd=vfe&ved=0CAoQjRxqFwoTCMCH7qLwv_ECFQAAAAAdAAAAABAD

Drafted by Venetia (Biology)