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IBDP Biology: Biochemical Comparisons for Classification --- Part 2

Biochemical Comparisons for Classification

August 14, 2022

In this topic of IBDP Biology, we will learn about Biochemical Comparisons for Classification --- Part 2.

DNA hybridisation

  • This allows for the comparison of whole DNA molecules rather than short sequences.
  • DNA sample is taken from one species and radioactively labelled.
  • DNA sample is taken from another species.
  • These are mixed.
  • The mixture is heated to break the hydrogen bonds holding the two DNA strands in the double helix.
  • Some of the strands are partially complementary and new hydrogen bonds reform between them.
  • The hybrid strands are identified because they have 50% of the radioactivity.
  • The are separated from the mixture.
  • Heat is then used to separate the strands.
  • The temperature at which the two strands separate is measured.
  • The more closely related tow species:
    • The greater the number of similarities between the two species DNA;
    • The greater the number of complementary base pairs form;
    • The higher the number of hydrogen bonds;
    • The greater the heat required to separate them.

Comparison of amino acid sequences

  • When it comes to IBDP Biology,  the primary structures of proteins are genetically determined.
  • The degree of similarity in the amino acid sequences of the proteins reflects the genealogy between two species.
  • For example, one of the most studied amino-acid sequences was that of cytochrome c.
  • This is an ancient protein common to all aerobic organisms.
  • The more differences in the amino acid sequence of the protein, the more distantly related the species.
  • The amino acid sequence of human cytochrome c is identical to that of the chimpanzee, but differs from the dog's by 13 amino acids, and from the tuna by 31 amino acids.
  • The sequence of amino acids can be compared with sequences of the protein from other species.
  • From the degree of similarity between species, phylogenetic trees can be hypothesized.

Immunological comparisons

  • Albumins and antibodies are both proteins.
  • Antibodies produced by the immune system are very sensitive to differences in the structure of molecules they are exposed to.
  • The antibodies of one species will react when exposed to blood serum, containing the proteins, of another.
  • A range of antibodies will be created that respond to the antigenic binding sites on the albumin.
  • Albumin from one of the species being investigated is injected into another ‘outgroup’ species.
  • When it comes to IBDP Biology,  the antibodies that respond against albumin, are collected from this outgroup species.
  • These antibodies, in the form of an antiserum are then exposed to the blood proteins of each of the other species under investigation.
  • The reaction is quantified by measuring the mass of the precipitate formed.
  • If an organism is very distantly related to outgroup species a strong reaction will take place between the blood serum.
  • Species more closely related to the outgroup will exhibit a weaker reaction.
  • This procedure is used less frequently today, due to the advancement of the other molecular methodologies.

That's the end of this topic.